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Add more steps to pytest
, fully remove behave
(#1347)
* update yaml loader to new method * Add config overrides steps to pytest This requires some patching around the config object, which now happens in every test. Co-authored-by: Micah Jerome Ellison <micah.jerome.ellison@gmail.com> * udpate docs for new tests * remove behave from deps * remove feature dir from flake8 checks * udpate lock file * disable pip version check (it keeps spamming the pipeline) Co-authored-by: Micah Jerome Ellison <micah.jerome.ellison@gmail.com>
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112 changed files with 264 additions and 4814 deletions
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@ -40,9 +40,7 @@ def run(args):
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original_config = config.copy()
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# Apply config overrides
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overrides = args.config_override
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if overrides:
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config = apply_overrides(overrides, config)
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config = apply_overrides(args, config)
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args = get_journal_name(args, config)
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config = scope_config(config, args.journal_name)
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@ -1,7 +1,8 @@
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from .config import update_config, make_yaml_valid_dict
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from argparse import Namespace
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# import logging
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def apply_overrides(overrides: list, base_config: dict) -> dict:
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def apply_overrides(args: Namespace, base_config: dict) -> dict:
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"""Unpack CLI provided overrides into the configuration tree.
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:param overrides: List of configuration key-value pairs collected from the CLI
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@ -11,6 +12,10 @@ def apply_overrides(overrides: list, base_config: dict) -> dict:
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:return: Configuration to be used during runtime with the overrides applied
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:rtype: dict
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"""
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overrides = vars(args).get("config_override", None)
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if not overrides:
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return base_config
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cfg_with_overrides = base_config.copy()
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for pairs in overrides:
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